UC sequences genome of common farm pest

Stable flies cause $2B in losses each year — and they're so annoying

Researchers at the University of Cincinnati hope to use an agricultural pest’s genetic code against it to prevent billions of dollars in annual losses in the United States.

Stable flies, or Stomoxys calcitrans, are spotted, tan-colored flies found around the world. They are easily mistaken for the common housefly but for one notable distinction: They bite.

“If you get one in your house and it bites you, it’s a stable fly,” said UC associate professor Joshua Benoit.

Joshua Benoit, University of Cincinnati assistant professor researching the genome of the Stable Fly shown here in Benoit’s lab at Rieveschl. UC/Joseph Fuqua II

In his biology lab, UC associate professor Joshua Benoit and his students sequence the genomes of insects to help develop more effective pest controls. Photo/Joseph Fuqua II/UC Creative + Brand

Stable flies don’t bite so much as chomp. They are the scourge of beachgoers in Florida and recreational boaters in upstate New York. According to Thomas Jefferson, they tormented signatories of the Declaration of Independence.

“You shoo it away and shoo it away but it’s persistent and lands on you. And then it bites. And it’s not a pleasant bite. It’s a pretty vicious, painful bite,” Benoit said.

The study demonstrates UC's commitment to research as described in its strategic direction called Next Lives Here.

UC joined an international team that unlocked the genome of stable flies. Benoit and his students contributed to a fundamental research project called i5k that has the ambitious goal to sequence the genes of 5,000 species of arthropods, the group that includes spiders, insects and crabs.

It’s a nonstop onslaught all the time. The flies need a blood meal to survive and reproduce, so they will keep trying to bite and trying to bite. They are very persistent.

Joshua Benoit, UC biologist

“It’s a pretty cool project. Molecular research on stable flies is far behind many other organisms. Our goal was to jump it up so we have a good model system to understand the biology of stable flies,” Benoit said.

Previously, UC worked on similar projects for bedbugs and the agricultural menaces thrips and screwworms.

A Cape buffalo shakes its head in a cloud of flies.

Stable flies are the bane of livestock and wildlife alike. A Cape buffalo is tormented by flies at Lake Nakuru, Kenya. Photo/Michael Miller

With stable flies, Benoit said they were looking for possible weaknesses to exploit in its genetic code. Researchers examined stable fly biology using genomic sequencing and RNA analysis over the fly’s development. They also identified 1,600 genes related to stable fly reproduction, which could lead to new biological controls without the use of pesticides.

“Conducting research for its own sake is reward enough, but it is always heartening when the findings generate interesting novel avenues for exploration,” study co-author and UC postdoctoral researcher Christopher Holmes said.

“In a common pursuit of knowledge, dozens of researchers poured their time and effort into understanding this incredibly important livestock pest,” Holmes said. “Through my involvement in this project, I was able to build unique connections and reinforce existing collaborations with prominent researchers from around the world.”

The study was published in the journal BMC Biology. Pia Untalan Olafson of the U.S. Department of Agriculture was the study’s lead author.

“Stable flies are arguably one of the most important pests of livestock in the United States,” Olafson said.

The project has huge economic implications from tourism to agriculture. Nobody can nap in a beach chair with stable flies for company. The flies cause an estimated $2.2 billion in livestock production each year, according to the U.S. Department of Agriculture. Cows beset by stable flies produce less milk and put on less weight.

Two people, one sitting, look at a computer screen at a desk separated by a glass wall from shelves and biology lab benches in the background.

UC associate professor Joshua Benoit, standing, and postdoctoral researcher Christopher Holmes collaborate in Benoit's biology lab. Photo/Joseph Fuqua II/UC Creative + Brand

Unlike mosquitoes, both male and female stable flies bite. 

“It’s a nonstop onslaught all the time. The flies need a blood meal to survive and reproduce. So they will keep trying to bite and trying to bite. They are very persistent,” Benoit said.

“When you get a thousand of these biting a cow, it can have a huge impact on agricultural productivity.”

Olafson said the research has implications far beyond the United States.

“Worldwide, these flies have become a societal issue of public and political importance,” she said. “Growing international agroindustries, like pineapple, coffee and sugarcane, produce large amounts of byproduct that are ideal sites for stable fly larvae to develop. These sites can produce upwards of hundreds of thousands of flies per acre. Livestock producers and communities that neighbor these industries feel the impact.”

UC’s study also helps scientists better understand why some flies evolved to feed on blood while similar species didn’t. The flies lay their eggs in wet or rotting vegetation like the wet hay or straw found around barns and stables that give them their associated name.

By understanding the genes responsible for stable fly reproduction, researchers hope to design novel biological controls similar to methods that have worked to eradicate other pests such as screwworms. The USDA raises screwworms by the millions, releasing sterilized males over Central America to keep them from pushing north to plague North American cattle ranches.

“Any targeted control like that is probably better than widescale pesticide application, which will kill all insects. So you don’t have to release chemicals into the environment,” Benoit said.

Featured image at top: Hungry eyes of a stable fly. Photo/Geoffrey Attardo/UC Davis

A fat fly sits on a metal railing with dairy cows in the background.

A stable fly rests on a corral railing at a dairy farm in Lingleville, Texas. Photo/Pia Untalan Olafson

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